As a non-profit organization, your accounting software needs to be able to accurately handle contributions from donors, grants, investments and fund raising events, and produce reports that make submitting IRS Form 990 and other tax reporting easier. Small non-profit organizations don't have the cash to spend on expensive specialized accounting software, so I've rounded up some low cost options.
Volunteers without significant accounting experience should not set up accounts in software without help from a CPA or nonprofit financial specialist. The Northland Foundation has a good example of a chart of accounts that can be used to set up accounting software for nonprofit organizations.
This list is definitely not exhaustive. I've not included software that required contact with a sales person for price quote or higher-priced accounting software.
1. Aplos
Aplos is online accounting software specifically designed for non-profits and it is customizable so it can be set up to meet your organization's financial needs. This software is quite new, and it looks like a very promising option for small nonprofit organization accounting. Buy the base accounting software then add on modules like contributions management, contact management, budgeting, reconciliation and check printing.
Aplos Online supports as many users as an organization requires, and it takes less than an hour to learn how to navigate and use. Aplos online accounting software offers several advantages over desktop software, like data back up, the ability to use the app from any computer and no updates or upgrades to install.
The base accounting software includes:
Free trial: 15 days
Platform: Online Support: Ongoing.
Support: 1 year
Learn more: AplosSoftware.com
Aplos Online supports as many users as an organization requires, and it takes less than an hour to learn how to navigate and use. Aplos online accounting software offers several advantages over desktop software, like data back up, the ability to use the app from any computer and no updates or upgrades to install.
The base accounting software includes:
- Accounts payable and receivable
- Check Register for transaction entries
- Journal entries
- Custom reports
- Easy data entry for charitable contributions
- Automated accounting entries for contributions
- Track contributions by person
- Contribution statement print outs
- Donors are automatically entered into People (contact management) module.
Free trial: 15 days
Platform: Online Support: Ongoing.
Support: 1 year
Learn more: AplosSoftware.com
2. Zoho Books with Non-Profit Modules
Zoho is an online office suite with easy-to-use tools that all work together. The business applications in Zoho include accounting software (Books), a CRM app which can be used for tracking donors and that integrates with email, a human resources module that's free for up to 10 employees, among others. Some perks that Zoho Books authors for nonprofits are multiple currency support, support for bank and credit card accounts, data sharing with an accountant and the ability to receive online payments. Zoho Books can be used by two users with additional user support for $5 a month.
Free or low cost modules that are specific to nonprofits are available from Zoho Marketplace and include:
Free trial: 30 days
Platform: Online Support: Ongoing
Support: 1 year
Learn more: zoho.com/books
Free or low cost modules that are specific to nonprofits are available from Zoho Marketplace and include:
- Donor Management
- Club Registration
- Volunteer Registration
- Grant Tracking
- community Bulletin Board
Free trial: 30 days
Platform: Online Support: Ongoing
Support: 1 year
Learn more: zoho.com/books
3. Big E-Z
Big E-Z is not stand alone accounting software, rather it is a spreadsheet template designed to be used with Microsoft Excel. It doesn't require double entry accounting and is updated every year to include the latest IRS tax regulations. The template files consist of 12 monthly files with customizable income and expense columns.
Big E-Z is a possible accounting solution for very small non-profit organizations with a bookkeeper who is familiar with Excel. Big E-Z can only be used on one computer. While the template does not require any Excel programming, having an understanding of how Excel works will make using Bid E-Z truly easy. The template package can be downloaded immediately after purchase, and a software CD follows in the mail along with a receipt organizer book.
Free trial: None
Platform: Windows Support: 1 year
Learn more: BigEZ.com
Big E-Z is a possible accounting solution for very small non-profit organizations with a bookkeeper who is familiar with Excel. Big E-Z can only be used on one computer. While the template does not require any Excel programming, having an understanding of how Excel works will make using Bid E-Z truly easy. The template package can be downloaded immediately after purchase, and a software CD follows in the mail along with a receipt organizer book.
- Quarterly and year-end reports
- Help buttons guide user
- Tracks 12 income subcategories and 65 expense subcategories
- Checkbook reconciliation
- Mileage tracking
- Budgeting
- Multiple Accounts version for up to 4 checking accounts
Free trial: None
Platform: Windows Support: 1 year
Learn more: BigEZ.com
4. Araize FastFund Accounting Standard
This software was designed by CPAs to specifically meet fund accounting and FASB reporting for nonprofit organizations, which is a great advantage. The disadvantage is that the cost of the standard software only includes 30 days of phone support. FastFund also has fund raising software and payroll software, but these will set you back another $300 each. From what I could determine only the payroll software integrates with the accounting software.
Free trial: 30 days
Platform: Windows Support: 30 days
Support: 1 year
Learn more: FastFund Accounting Standard
- Fund balancing audit reports
- FASB 117 Compliant Reports
- FASB 117 Compliant Reports
- Nonprofit Terminology on Reports
- Program budgets
Free trial: 30 days
Platform: Windows Support: 30 days
Support: 1 year
Learn more: FastFund Accounting Standard
5. QuickBooks Nonprofit
The majority of nonprofits use the very popular QuickBooks accounting software. While this software may be too expensive for most small nonprofits (see if you can find it on TechSoup.org), it needs to be included on this list. QuickBooks Nonprofit has all the features of QuickBooks Pro with tools specifically for nonprofit organizations. Advanced reports include program budget tracking donations and expenses. QuickBooks also has a variety of add-ons (additional fees apply) for payroll credit card processing, bill pay services, check printing and more - so the conveniences are there, but they can really add up.
Free trial: None, 60 day money back guarantee
Platform: Windows Support: Ongoing
Support: 1 year
Learn more: QuickBooks Nonprofit Website
- Track donations and pledges
- Tutorials specific to the Nonprofit edition
- Easy to learn how to use
- Good customer support
- Fund raising and pledge support
Free trial: None, 60 day money back guarantee
Platform: Windows Support: Ongoing
Support: 1 year
Learn more: QuickBooks Nonprofit Website
6. QuickBooks Online Essentials
A less expensive and more convenient QuickBooks option is QuickBooks online, although there is no nonprofit module so an accountant would definitely have to help with setting up the software. Another option is using the book, Running QuickBooks in Nonprofits, shows organizations how to work with the software as it is. QuickBooks Online Essentials supports three users, has iPhone, BlackBerry and Android apps, and automated online banking. A payroll module can be added.
Cost: $25, or $51.16 with payroll
Free trial: 30 days
Platform: Online Support: Ongoing
Support: 1 year
Learn more: QuickBooks Online Essentials
Cost: $25, or $51.16 with payroll
Free trial: 30 days
Platform: Online Support: Ongoing
Support: 1 year
Learn more: QuickBooks Online Essentials
7. GnuCash
GnuCash is double entry accounting software that's great for small business, but that can only work for very small nonprofit organizations that don't mind importing some numbers into Excel to get the proper reports due to the lack of any nonprofit plug-ins or add-ons. GnuCash makes it to this list because it's free, supports multiple currencies and has been translated into several languages.
Free trial: n/a
Platform: Windows, Mac and Linux Support: Online user manual, tutorials, and concepts guide
Support: 1 year
Learn more: GnuCash.org
- Actively developed
- Good set of financial reports
- Statement of reconciliation
- Support for investments
- Job tracking could be used for fund-raising purposes
- Budgeting
- Check printing
- Mortgage and loan support
Free trial: n/a
Platform: Windows, Mac and Linux Support: Online user manual, tutorials, and concepts guide
Support: 1 year
Learn more: GnuCash.org








